The MuST-C dataset: The Multi-Sensor and Multi-Temporal Dataset of Multiple Crops for In-Field Phenotyping and Monitoring

Phenotyping is crucial for understanding crop trait variation and advancing research, but is currently limited by expensive, labor-intensive monitoring. New phenotypic trait monitoring methods are being proposed to reduce this so-called phenotyping bottleneck via automation. These methods are often data-driven, requiring a dataset recorded with a specific sensor and corresponding reference values for novel method development. To this end, we present the MuST-C (Multi-Sensor, multi-Temporal, multiple Crops) dataset, which contains field data from various sensors collected over one growing season, covering six crop species. All data are geo-referenced for alignment across sensors and dates. To collect our dataset, we deployed aerial and ground robotic platforms equipped with RGB cameras, LiDARs, and multi-spectral cameras to achieve a high variety of modalities and observations from varying viewpoints. In addition to sensor data, we also provide manually collected leaf area index and biomass reference measurements. Our dataset enables the development of novel automatic phenotypic trait estimation methods, allows comparisons across different sensors, and generalizability across crop species.

Quick Start

Our dataset comprises data from multiple sensors over multiple days and multiple crops, and can be used for multiple tasks. In this example, we show how you can quickly start by performing a simple data processing: sorting all data into plot-level data for a given plot.

  1. Data: Download the Sample Data (5 GB) that contains data for a single plot in the folder structure provided. After unzipping the sample data, you can open the data in your favorite software.
  2. Code: Get the code by cloning (or downloading the zip file of the repository) from our Git repository https://github.com/PRBonn/MuST-C.
  3. Example: Our data is geo-referenced, therefore, one can extract a plot from the provided data. Inside the dev_kit folder you can run the following command to extract the data for plot id 198 (a sugar beet plot):
    python3 get_plot_data.py --parent_dir /path/to/dataset --output_dir path/to/output --plot 198

Overview

Our dataset provides different data packages, which we provide as archives. To provide a better overview of the available data per platform (i.e., ground vehicles (UGVs) and aerial drones (UAVs)), we show here the specification of the different platform/sensor combinations the available files per week. Please select a week using the slider and a platform.

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Platform Specification
UAV1-RGB
Type DJI Matrice 300 RTK (M300)
Manufacturer SZ DJI Technology Co., Ltd., Shenzhen, China
GNSS RTK (built-in)
Sensor Specification
PhaseOne iXM-100
Type RGB camera
Manufacturer PhaseOne, Copenhagen, Denmark
Sensor Type CMOS
Resolution 11,664 x 8,750 pixel
ISO 125
Weight (w/o lens) 630 g
Dimensions (w/o lens) 90 x 90 x 67 mm
Available Data
      Platform Details
      UAV2-RGB
      Type DJI Matrice 600 PRO
      Manufacturer SZ DJI Technology Co., Ltd., Shenzhen, China
      GNSS RTK (built-in) + Applanix APX-20 IMU + Applanix AV14 GNSS
      Sensor Specification
      Sony α 7R
      Type RGB camera
      Manufacturer Sony, Tokyo, Japan
      Sensor Type CMOS
      Resolution 7,360 x 7,360 pixel
      ISO 100
      Weight (w/o lens) 465 g
      Dimensions (w/o lens) 127 x 94 x 55 mm
      Available Data
          Platform Details
          UAV2-Lidar
          Type DJI Matrice 600 PRO
          Manufacturer SZ DJI Technology Co., Ltd., Shenzhen, China
          GNSS RTK (built-in) + Applanix APX-20 IMU + Applanix AV14 GNSS
          Sensor Specification
          RIEGL miniVUX-SYS
          Type LiDAR
          Manufacturer RIEGL Laser Measurement Systems GmbH, Horn, Austria
          Resolution x pixel
          Available Data
              Platform Details
              UAV3-RGB
              Type DJI Matrice 600 PRO
              Manufacturer SZ DJI Technology Co., Ltd., Shenzhen, China
              GNSS RTK (built-in)
              Sensor Specification
              Sony α 7R
              Type RGB camera
              Manufacturer Sony, Tokyo, Japan
              Sensor Type CMOS
              Resolution 6,240 x 4,160 pixel
              ISO 100
              Weight (w/o lens) 465 g
              Dimensions (w/o lens) 127 x 94 x 55 mm
              Available Data
                  Platform Details
                  UAV3-MS
                  Type DJI Matrice 600 PRO
                  Manufacturer SZ DJI Technology Co., Ltd., Shenzhen, China
                  GNSS RTK (built-in)
                  Sensor Specification
                  RedEdge-MX Dual Camera System
                  Type Multispectral Camera
                  Manufacturer AgEagle Sensor Systems Inc., Wichita, KS, USA
                  Resolution 1,280 x 960 pixel
                  Bands Coastal blue, blue, green 1, green 2, red 1, red 2, red edge 1, red edge 2, red edge 3, NIR
                  Weight 509 g
                  Dimensions (w/o lens) 87 x 123 x 76 mm
                  Available Data
                      Platform Details
                      UGV-RGB
                      Type Thorvald II
                      Manufacturer Saga Robotics, Oslo, Norway
                      GNSS multi-GNSS and SBG Ellipse D IMU
                      Sensor Specification
                      Nikon Z7 (20 cameras)
                      Type RGB Cameras
                      Manufacturer Nikon Corporation, Tokyo, Japan
                      Sensor Type CMOS
                      Resolution 8,256 x 5,504 pixel
                      ISO 200
                      Weight (w/o lens) 675 g
                      Dimensions (w/o lens) 134 x 101 x 68 mm
                      Available Data
                          Platform Details
                          UGV-Ouster
                          Type Thorvald II
                          Manufacturer Saga Robotics, Oslo, Norway
                          GNSS multi-GNSS and SBG Ellipse D IMU
                          Sensor Specification
                          Ouster OS1
                          Type Automotive LiDAR
                          Manufacturer Ouster, Inc., San Francisco, CA, USA
                          Num. Beams 128
                          Available Data
                              Platform Details
                              UGV-LMI
                              Type Thorvald II
                              Manufacturer Saga Robotics, Oslo, Norway
                              GNSS multi-GNSS and SBG Ellipse D IMU
                              Sensor Specification
                              LMI Gocator 2490 laser triangulation scanners
                              Type LiDAR
                              Manufacturer LMI Technologies, Burnaby, Canada
                              Resolution x pixel
                              Available Data

                                  Plants

                                  Sugar Beet
                                  Species Sugar Beet
                                  Varieties BTS440
                                  Details Herbicide concentrations: 0% / 50% / 75% / 100%
                                  Soy Bean
                                  Species Soy Bean
                                  Varieties Eiko and Minngold
                                  Potato
                                  Species Potato
                                  Varieties Belana and Gala
                                  Maize
                                  Species Maize
                                  Varieties Khan, Popcorn Robust, Mirza, and Caramelo
                                  Wheat
                                  Species Wheat
                                  Varieties Granus
                                  Details Sowing densities: 150/250/350/450 seeds m-2
                                  Wheat & Faba Beans (Intercrop)
                                  Species Wheat and Faba Beans (Intercrop)
                                  Varieties Wheat: Sorbas, Faba: Fanfare

                                  Folder structure

                                  We organized the data into super categories and split the data into platform-specific folders inside the categories.

                                  Extracting the provided zip files in a directory will result in the above folder structure, which is also used by our provided code.

                                  Code

                                  Please see our GitHub repository available at https://github.com/PRBonn/MuST-C. We provide Python scripts to extract plots,

                                  Citation

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